GgaEX1007028 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16849410-16852567:-
Coord C1 exon
chr7:16852496-16852567
Coord A exon
chr7:16850926-16851005
Coord C2 exon
chr7:16849410-16849490
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGCATGTTAAAAAGGGG
3' ss Score
3.64
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
TTTGCCATGAAGATGTAGTTAAAATTGTGGAATTAGCCTGCAAACATAATCTCTGCATAATACCGTTTGGTG
Seq A exon
GGGGAACGAGTGTCTCTCCCCCCCTTGAATGCCCTGAAGAAGAAAAAAGAACAATTGTCTCTCTGGATACATCACAAATG
Seq C2 exon
AATCGGATTCTCTGGATAGATGAGAAGAACTTAACAGCATGTGTGGAAGCTGGCATTATTGGACAAGATTTGGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(16.9=100)
A:
PF0156518=FAD_binding_4=FE(18.3=100)
C2:
PF0156518=FAD_binding_4=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGAAGATGTAGTTAAAATTGT
R:
CTGTTTTTCCAAATCTTGTCCAATAA
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]