HsaEX6016843 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177440965-177521368:+
Coord C1 exon
chr2:177440965-177441036
Coord A exon
chr2:177442407-177442486
Coord C2 exon
chr2:177521269-177521368
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCCTATTTTGGCAGGAG
3' ss Score
5.92
5' ss Seq
ATGGTATTT
5' ss Score
3.85
Exon sequences
Seq C1 exon
CATGCCATGATGATGTAGTTAAGATTGTGAATCTAGCTTGCAAATATAATCTTTGTATCATACCAATTGGTG
Seq A exon
GAGGAACAAGTGTTTCATATGGCCTGATGTGTCCTGCAGATGAGACAAGAACAATTATTTCTTTGGACACTTCACAAATG
Seq C2 exon
GGTGACGCAGACTTACGATGCAGGTGCTTGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTATTTGAACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-7/19=6-19
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(16.8=100)
A:
PF0156518=FAD_binding_4=FE(18.2=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCATGATGATGTAGTTAAGAT
R:
TTTGTTCAAATACGGTCAGTGGGT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains