RnoEX6017474 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62673466-62681577:+
Coord C1 exon
chr3:62673466-62673537
Coord A exon
chr3:62675182-62675261
Coord C2 exon
chr3:62681497-62681577
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTCGTCTCCTGTTTTGACAGGGG
3' ss Score
7.65
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CATGTCATGATGATGTAGTTAAGATTGTGAATCTAGCGTGCAAATATAACCTTTGTATCATACCAATTGGTG
Seq A exon
GGGGAACGAGTGTATCCTATGGCCTGATGTGCCCTGCAGATGAGACAAGAACAATAATTTCTTTGGATACTTCACAAATG
Seq C2 exon
AACCGGATTCTCTGGGTTGATGAGAACAATCTGACAGCTCACGTAGAGGCTGGGATAACAGGACAAGATTTGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'14-10,'14-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(16.7=100)
A:
PF0156518=FAD_binding_4=FE(18.1=100)
C2:
PF0156518=FAD_binding_4=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTGAATCTAGCGTGCA
R:
TGTCTTTCCAAATCTTGTCCTGT
Band lengths:
131-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]