MmuEX0004283 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75857017-75862014:+
Coord C1 exon
chr2:75857017-75857088
Coord A exon
chr2:75858899-75858978
Coord C2 exon
chr2:75861934-75862014
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCCTGTTTTGACAGGAG
3' ss Score
8.01
5' ss Seq
ATGGTATAT
5' ss Score
3.91
Exon sequences
Seq C1 exon
CATGTCATGATGATGTAGTTAAGATTGTGAATCTAGCTTGCAAATATAACCTTTGTATCATACCAATTGGTG
Seq A exon
GAGGAACAAGTGTGTCCTATGGCTTGATGTGTCCTGCAGACGAGACAAGAACAATAATTTCTTTGGACACTTCACAAATG
Seq C2 exon
AACCGGATTCTCTGGGTTGATGAGAACAATCTGACAGCTCACGTAGAGGCTGGGATAACAGGACAAGATTTGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410-'12-10,'12-9,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(16.7=100)
A:
PF0156518=FAD_binding_4=FE(18.1=100)
C2:
PF0156518=FAD_binding_4=FE(18.1=100)
Main Skipping Isoform:
ENSMUST00000047232fB5566
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTGAATCTAGCTTGCAAAT
R:
TGTCTTTCCAAATCTTGTCCTGT
Band lengths:
131-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types