BtaEX6008960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001585 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:22269738-22279736:+
Coord C1 exon
chr2:22269738-22269867
Coord A exon
chr2:22275545-22275718
Coord C2 exon
chr2:22278966-22279736
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTCTTCCTTCTACAGAAC
3' ss Score
11.74
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
GCCAATACAGAAAAGCCTTCCTTGAGTAAGTCAGAGCAGGCTGGGAGAAATGCTCTGCTCTCTGACATCAGCAAAGGGAAGAAACTAAAGAAGACAGTCACCAATGACAGAAGTGCACCAATATTGGACA
Seq A exon
AACCCAAAGGAGCTGCTGCTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCAGCTATGCTGGAGGTGGCGGAGGAGGAGGTGGTGGAAATTTTGGCGGAGGTGGACCACCCGGTTTGGGAGGACTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACAGCCAACAGGGAGAATG
Seq C2 exon
AGTCCGGAGGAAGCCGACCTCCAATCTTGCCACCAGGAGGAAGAGCCACATCCGCCAAACCTTTCACACCCCCAAGCGGCCCAGGGAGGTTCCCTGTGCCTCCTGCAGGCCACAGAAGCGGACCCCCAGAGCCTCAGAGGAACCGAATGCCTCCCCCGAGACCCGAAGTGGGCGCAAAGCCTGATAACATCCCCCCTCCAGTGCCTAATACTCCAAGACCCAGTCAGTCAAGTCTGCACAACCGGGGGACCCCCCTAGTGCTGGGGGCTCCCCGGCAGTCCAGTCCTGGGCTGACCCCTCCCCCTTTCCCCGGAAACCGAGGTGCTGCTTTCGGAGGAGGCTCCATCCGTCACACCCCCTCAGGCTCCTCCACGCCTTTCTCCACTAGGCCTCCCCTGCCTCCTACTCCGAGCAGGGCCTTGGATGACAAGCCCCCTCCTCCGCCTCCTCCGGTGGGCAACAGACCCTCCATCCACAGGGAGTCGGTGCCGCTGCCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001585-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGGAGAAATGCTCTG
R:
ATTCGGTTCCTCTGAGGCTCT
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]