DreEX0085307 @ danRer10
Exon Skipping
Gene
ENSDARG00000104300 | wipf1a
Description
WAS/WASL interacting protein family, member 1a [Source:ZFIN;Acc:ZDB-GENE-080204-101]
Coordinates
chr9:2457753-2461218:+
Coord C1 exon
chr9:2457753-2457882
Coord A exon
chr9:2458017-2458151
Coord C2 exon
chr9:2460322-2461218
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTAACTGTTCATTTATACAGAGC
3' ss Score
6.72
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GCAAACACAGAGAAGCCGAATCTGAGCAGGAATGAGCAGCAAGGGAGGAACGCTTTACTTTCAGACATCAATAAAGGGGCTCGACTGAAGAAAACCATCACCAATGACCGCAGCGGCCCAGTGCTTGACA
Seq A exon
AGCCCAAAGGAGGTGGAGGTGGAGGAGGAGGAGGTGGAGGAGGAGGTTTTGGGGGCGGAGCTTCAGGTGGAATGGGCGGCCTGTTTCAAGGAGGAATGCCAAGGCTGAAATCAGCAGGAAACCGAGATGGCAATG
Seq C2 exon
TAAGAGCACCAATGCCCCCTTCAGGCGGAAGGTTCCCAGCACCTAGCAGCCCAGCTGGAAGATTCCCAGCTCCCAGCAGCCCTGCAGGAAGCAGACCACCAGTCCCTGGTCCAGGACGTCCTTCTCCTGGGAGAGCCGGACCACCACCCATCCCATCCTCATCACGTTCACCCCAGCACAGCTCTCCTGGAGGACCACCACCTATTCCTGGAGGACGTCCACAGGGTTCCTCACCCGCACCACCACCCCCAAACTCATCAGGCAGACGAACAAGCTTTCCTCAACCTCCAAGGGAGTCCCAGTCCTCCTTCCCTCCACCTCCAAGAGAGTCCACCTTCCCTCCACCCCCAAGAGAGTCCTCCTTCCCTCCACCCCCAAGAGAGTCCTCCTTCCCTCCACCCCCAAGAGAGTCCTCCTTCCCTCCACCCCCAAGAGAGTCCTCCTTCCCTCCTCCCCCAAGAGAGTCACATTCCTCCTTCCCTCCTCCTCCAAGAGAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104300-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(67.3=84.1),PF0220515=WH2=WD(100=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCATCACCAATGACCGCA
R:
AATAGGTGGTGGTCCTCCAGG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]