HsaEX0071515 @ hg19
Exon Skipping
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:12736]
Coordinates
chr2:175436404-175446167:-
Coord C1 exon
chr2:175446038-175446167
Coord A exon
chr2:175439932-175440108
Coord C2 exon
chr2:175436404-175437174
Length
177 bp
Sequences
Splice sites
3' ss Seq
GGGTGTCTCTTCTTCTACAGAAC
3' ss Score
9.48
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GCCAATACAGAGAAGCCTACCTTGAATAAGACAGAGCAGGCTGGGAGAAATGCTCTCCTTTCTGATATCAGCAAAGGGAAGAAACTAAAGAAGACGGTCACCAATGACAGAAGTGCACCAATACTGGACA
Seq A exon
AACCTAAAGGAGCTGGTGCTGGAGGCGGTGGTGGTGGCTTTGGTGGAGGCGGCGGATTTGGCGGAGGAGGTGGTGGCGGAGGCGGTGGAAGTTTTGGAGGGGGCGGACCTCCAGGTCTGGGAGGATTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACGGCCAACAGGGATAATG
Seq C2 exon
ATTCTGGAGGAAGCCGACCACCATTGTTGCCACCGGGAGGAAGATCCACATCTGCGAAACCCTTTTCACCCCCAAGTGGCCCAGGGAGGTTTCCTGTGCCTTCTCCAGGCCACAGAAGTGGTCCCCCAGAGCCTCAGAGGAACCGAATGCCGCCCCCAAGGCCCGACGTGGGCTCAAAGCCTGATAGCATTCCTCCTCCAGTACCTAGTACTCCAAGACCCATTCAATCAAGTCCGCACAACCGGGGGTCCCCACCAGTGCCCGGAGGCCCCAGGCAGCCCAGCCCCGGGCCCACTCCTCCCCCTTTCCCTGGAAACCGCGGCACTGCTTTGGGAGGAGGCTCAATACGTCAGTCCCCCTTGAGCTCCTCCTCGCCCTTCTCCAACCGGCCTCCCCTGCCGCCTACCCCCAGCAGGGCCTTGGATGACAAACCCCCTCCACCACCTCCTCCAGTGGGCAACAGGCCCTCCATCCACAGGGAAGCGGTTCCCCCTCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.998
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(69.0=90.9),PF062736=eIF-4B=FE(51.2=100),PF0220515=WH2=WD(100=61.4),PF071726=GRP=PU(48.0=81.8)
A:
PF062736=eIF-4B=FE(40.6=100),PF071726=GRP=FE(56.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGGCTGGGAGAAATG
R:
ATTCGGTTCCTCTGAGGCTCT
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)