MmuEX0052176 @ mm10
Exon Skipping
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73436954-73444574:-
Coord C1 exon
chr2:73444445-73444574
Coord A exon
chr2:73439977-73440156
Coord C2 exon
chr2:73436954-73437691
Length
180 bp
Sequences
Splice sites
3' ss Seq
CATCTTCCCTTCATCTGCAGAAC
3' ss Score
11.24
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GCTAACACTGAGAAGCCCACCTTGAACAAGACAGAGCAGGCTGGGAGGAATGCTCTTCTCTCTGACATCAGCAAAGGGAAGAAGCTAAAGAAGACGGTCACCAATGACAGAAGTGCCCCAATATTGGACA
Seq A exon
AACCAAAGGGAGCCGGCGCCAGTGCTGGTGGCTATGGTGGAGGCGGCGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCAGCGGTGGAAATTTTGGAGGGGGTGGTCCTCCAGGACTGGGAGGACTATTCCAGGCTGGAATGCCGAAGCTGAGGTCCACCGCCAACAGGGATAATG
Seq C2 exon
ATTCTGGAGGAAGCCGACCACCGATTTTGCCACCGGGAGGAAGAGCCACATCTGCCAAGCCCTTTTCACCCCCGAGTGGCCCGGGGAGGTTTCCCGCACCCTCCCCAGGCCACAGGAGTGGGCCCCCAGAGCCACCCAGGAACAGAATGCCTCCCCCGAGGCCTGACGTGGGCTCAAAACCAGATAGCCTTCCCCCTCCGGTACCAAATACGCCAAGACCTGTTCCGTCGAGTCTGCACAACCGGGGATCCCCAGCAGGGCTGGGAGCCCCCAGGCCCCCCTTTCCCGGGAACCGAGGTGCTGCTTTTGGAGCAGGCTCTGCGCGCCAGAACCCCTCCGGCTCCTCCTCTCCGTTTCCTAGGCCCCCTTTGCCCCCCACCCCAAGCCGAGCCTTGGATGACAAGCCCCCTCCACCACCTCCTCCCGTGGGCAACAGGCCCTCCATGCACAGAGAAGCGGTGCCCCCTCCCCCCTCACAGACCAGCAAACCTCCAGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(69.0=90.9),PF0220515=WH2=WD(100=61.4),PF071726=GRP=PU(35.5=61.4)
A:
PF071726=GRP=PD(63.2=78.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGACAGAGCAGGCTGG
R:
CATTCTGTTCCTGGGTGGCTC
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types