GgaEX1064192 @ galGal4
Exon Skipping
Gene
ENSGALG00000009321 | WIPF1
Description
WAS/WASL-interacting protein family member 1 [Source:RefSeq peptide;Acc:NP_001012935]
Coordinates
chr7:16350228-16354697:+
Coord C1 exon
chr7:16350228-16350357
Coord A exon
chr7:16352534-16352686
Coord C2 exon
chr7:16353930-16354697
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGGGACTTTTTTTCCAACAGAAC
3' ss Score
7.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCAAATACTGAAAAACCAACTCTAAGCAGGTCAGAACAGGCAGGGCGAAATGCTCTATTATCTGATATCACCAAAGGAAAAAAGCTAAAGAAGACTGTTACTAATGACAGAAGTGCTCCAATTCTAGACA
Seq A exon
AACCCAAAGGAAGCAGCGGATGTGGCGGTGGCTTTGGAGGAGGTGGCGGTGGCAGCAGTGGTGGCGGCTTCAGTGGTGGTGGGCCACCTGGCCTTGGAGGCCTTTTTCAAGCAGGAATGCCAAAGCTCAGATCTGCTGCGAGTCGAGATGCTG
Seq C2 exon
ATACTGGGGCAGCCCGCCCACCCGCACTGCCGCCTGGAGCCCGCTCTGCTGCTGCCAAGCCATTTTCAGCACCAAGTGGCCCACCTCGCTTCCCAGGGCCGCCACTGGGGCAGCGGAGCCCAGCTGCTGACCCTCAGAGGAGCCGCCTGCCACCACCCAGGCCCGATGTGGGTTCTAAGCCTGAGGCCACACCGCCACCGGTGCCTAGCACACCCCGGCCCATCGCCTCCAGTCTGCACGGCCGGGGTTCAGCACCAGCGCCAGTCCTCAACCGCCAGCCCAGCCTGGGGCCGACGCCACCGCCATTCCCAGGCAGCCGGGCCGCAGGGTCAGCTGGGTCCCTGCGGCAGCCTGGCCCGGGCCCAGCAACCCCATACTCGGGCAGACCACCGCTGCCACCCACACCCGGCCGCTCACCAGTGGATGAGAAACCACCGCCGCCACCACCTCCCTCTGGGCACCGGCCAACTGCCAGCCGGGACATGGCCCTGCCGCCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321-'10-8,'10-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000038663fB13798
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCAGGTCAGAACAGGCAG
R:
CTCCTCTGAGGGTCAGCAGC
Band lengths:
250-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]