GgaEX1064192 @ galGal3
Exon Skipping
Gene
ENSGALG00000009321 | Q5F3Q7_CHICK
Description
NA
Coordinates
chr7:18037333-18041803:+
Coord C1 exon
chr7:18037333-18037462
Coord A exon
chr7:18039639-18039791
Coord C2 exon
chr7:18041036-18041803
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGGGACTTTTTTTCCAACAGAAC
3' ss Score
7.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCAAATACTGAAAAACCAACTCTAAGCAGGTCAGAACAGGCAGGGCGAAATGCTCTATTATCTGATATCACCAAAGGAAAAAAGCTAAAGAAGACTGTTACTAATGACAGAAGTGCTCCAATTCTAGACA
Seq A exon
AACCCAAAGGAAGCAGCGGAGGTGGCGGTGGCTTTGGAGGAGGTGGCGGTGGCAGCAGTGGTGGCGGCTTCAGTGGTGGTGGGCCACCTGGCCTTGGAGGCCTTTTTCAAGCAGGAATGCCAAAGCTCAGATCTGCTGCGAGTCGAGATGCTG
Seq C2 exon
ATACTGGGGCAGCCCGCCCACCCGCACTGCCGCCTGGAGCCCGCTCTGCTGCTGCCAAGCCATTTTCAGCACCAAGTGGCCCACCTCGCTTCCCAGGGCCGCCACTGGGGCAGCGGAGCCCAGCTGCTGACCCTCAGAGGAGCCGCCTGCCACCACCCAGGCCCGATGTGGGTTCTAAGCCTGAGGCCACACCGCCACCGGTGCCTAGCACACCCCGGCCCATCGCCTCCAGTCTGCACGGCCGGGGTTCAGCACCAGCGCCAGTCCTCAACCGCCAGCCCAGCCTGGGGCCGACGCCACCGCCATTCCCAGGCAGCCGGGCCGCAGGGTCAGCTGGGTCCCTGCGGCAGCCTGGCCCGGGCCCAGCAACCCCATACTCGGGCAGACCACCGCTGCCACCCACACCCGGCCGCTCACCAGTGGATGAGAAACCACCGCCGCCACCACCTCCCTCTGGGCACCGGCCAACTGCCAGCCGGGACATGGCCCTGCCGCCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0121314=CAP_N=PD(68.4=88.6),PF0220515=WH2=WD(100=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCAGGTCAGAACAGGCAG
R:
CTCCTCTGAGGGTCAGCAGC
Band lengths:
250-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]