BtaEX6009046 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24525461-24527738:-
Coord C1 exon
chr2:24527589-24527738
Coord A exon
chr2:24526035-24526183
Coord C2 exon
chr2:24525461-24525503
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATTTAATATTTCAGGTT
3' ss Score
9.88
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGAATTGTACCCGACTGGGGAGACAGCATAGAAGTTAAGAATGAAGATCAGATTCAAGGGCTTCTCCAGGCTTGTCAGCTGGCCCGACATGTCCTCCTCTTGGCCGGGAAGAGTTTAAAG
Seq A exon
GTTGACATGACAACTGAAGAGATAGATGCTCTTGTTCATCAGGAAATAATCAGTCATGATGCCTACCCCTCACCTCTAGGCTATGGAGGGTTTCCAAAATCTGTTTGTACCTCTGTAAACAACGTGCTTTGTCATGGTATTCCTGACAG
Seq C2 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075-'9-8,'9-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(9.2=42.0)
A:
PF0055719=Peptidase_M24=PU(23.0=97.9)
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAAAGAAGCCAGACTATGTGACG
R:
TGATAATATCTCCATCCTGAAGAGGT
Band lengths:
178-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]