GgaEX1035933 @ galGal3
Exon Skipping
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19260863-19265089:-
Coord C1 exon
chr7:19264940-19265089
Coord A exon
chr7:19261619-19261767
Coord C2 exon
chr7:19260863-19260905
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTTATTTTTGATATTTCAGGTT
3' ss Score
9.06
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACGACATAGAAATTAAGAATGAAGATCAGATTCAAGGGCTTCGTCAGGCTTGTCAATTGGCCCGTCATGTCCTGCTTCTGGCTGGAAAGGGCTTAAAG
Seq A exon
GTTGGCATGACAACTGAAGAAATAGATTCCATTGTTCATCATGAAATAATCAGACGGAATGCCTATCCTTCACCTCTGGGCTATGGAGGTTTTCCAAAATCTGTTTGTACTTCTGTAAACAACGTGGTATGTCATGGTATTCCTGACAG
Seq C2 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(9.2=42.0)
A:
PF0055719=Peptidase_M24=FE(21.5=100)
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAAAGAAGCCAGACTATGTGACG
R:
TGATAATATCTCCATCCTGAAGAGGT
Band lengths:
178-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]