RnoEX6017388 @ rn6
Exon Skipping
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58141409-58147074:+
Coord C1 exon
chr3:58141409-58141558
Coord A exon
chr3:58146333-58146481
Coord C2 exon
chr3:58147032-58147074
Length
149 bp
Sequences
Splice sites
3' ss Seq
CACTTCTCTCCCTGTTCCAGGTT
3' ss Score
11.1
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTGCCCGACTGGGGAGACAGCATAGAAGTTAAAAATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGCGGCACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
Seq A exon
GTTGGCATGACAACTGAAGAGATAGATGCACTAGTTCACCGGGAAATCATCAGGCGTGACGCATATCCCTCACCTCTGGGCTATGGCCGCTTTCCAAAATCTGTCTGCACCTCTGTAAACAATGTGCTCTGTCATGGCATTCCTGACAG
Seq C2 exon
CCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587-'9-6,'9-5,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(9.2=42.0)
A:
PF0055719=Peptidase_M24=FE(21.5=100)
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAAAGAAGCCAGACTATGTGACG
R:
TGATAATATCTCCATCCTGAAGAGGT
Band lengths:
178-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]