HsaEX0001112 @ hg19
Exon Skipping
Gene
ENSG00000172878 | AC015976.3
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:32583]
Coordinates
chr2:172928439-172931034:+
Coord C1 exon
chr2:172928439-172928588
Coord A exon
chr2:172930332-172930480
Coord C2 exon
chr2:172930992-172931034
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATTTAACATTTTAGGTT
3' ss Score
9.96
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACAGCATAGAAGTTAAGAATGAAGATCAGATTCAAGGGCTTCATCAGGCTTGTCAGCTGGCCCGCCACGTCCTCCTCTTGGCTGGGAAGAGTTTAAAG
Seq A exon
GTTGACATGACAACTGAAGAGATAGATGCTCTTGTTCATCGGGAAATCATCAGTCATAATGCCTATCCCTCACCTCTAGGCTATGGAGGTTTTCCAAAATCTGTTTGTACCTCTGTAAACAACGTGCTCTGTCATGGTATTCCTGACAG
Seq C2 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172878_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(12.4=42.0)
A:
PF0055719=Peptidase_M24=FE(21.5=100)
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAAAGAAGCCAGACTATGTGACG
R:
TGATAATATCTCCATCCTGAAGAGGT
Band lengths:
178-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)