DreEX0046069 @ danRer10
Exon Skipping
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30152170-30158641:+
Coord C1 exon
chr1:30152170-30152319
Coord A exon
chr1:30152432-30152580
Coord C2 exon
chr1:30158599-30158641
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTATATTGTTTGTTTCTCAGGTT
3' ss Score
8.88
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAG
Seq A exon
GTTGGTATGACGACAGATGAAATAGACTTTATAGTCCATCAAGAAGCGATTCGTCACAATGGCTACCCTTCTCCCTTACATTATGGGGGCTTTCCGAAGTCGGTCTGTACCTCTGTGAACAATGTTGTATGTCACGGCATTCCAGACAG
Seq C2 exon
TCGGCCATTGCAGGATGGTGATATCATCAATATTGATGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715-'5-8,'5-4,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(25.9=42.0)
A:
PF0055719=Peptidase_M24=FE(21.5=100)
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGCCTGACTACGTGTC
R:
ATATTGATGATATCACCATCCTGCA
Band lengths:
178-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]