MmuEX6102115 @ mm10
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71509741-71512168:+
Coord C1 exon
chr2:71509741-71509890
Coord A exon
chr2:71511412-71511560
Coord C2 exon
chr2:71512126-71512168
Length
149 bp
Sequences
Splice sites
3' ss Seq
CACTTTATTTCCTGTTTCAGGTT
3' ss Score
11.48
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
CGCATAAAGAAGCCAGACTACGTGACGACAGGCATTGTGCCGGACTGGGGAGACAGCATAGAAGTGAAGGATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGAGACACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
Seq A exon
GTTGACATGACAACTGAAGAGATAGATGCGCTTGTTCATTGGGAAATCATCAGGCATGACGCATATCCCTCACCTCTGGGCTATGGACGCTTTCCAAAATCTGTTTGCACCTCTGTAAACAACGTGCTCTGTCATGGCATTCCTGACAG
Seq C2 exon
CCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921-'9-17,'9-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(14.3=42.0)
A:
PF0055719=Peptidase_M24=FE(21.5=100)
C2:
PF0055719=Peptidase_M24=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATAAAGAAGCCAGACTACGT
R:
TGATAATATCTCCATCCTGAAGAGGT
Band lengths:
179-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types