BtaEX6009052 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010118 | HAT1
Description
Bos taurus histone acetyltransferase 1 (HAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034347]
Coordinates
chr2:24614407-24624041:-
Coord C1 exon
chr2:24623935-24624041
Coord A exon
chr2:24616974-24617125
Coord C2 exon
chr2:24614407-24614523
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATTCTGCTTTCTTTCTTTAGCGG
3' ss Score
9.26
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TCAAATGCTGATATTGACTCCATTTCAAGGTCAAGGCCATGGTGCTCAACTTCTTGAAACAGTTCATAGATACTACATTGCATCTCCTTCTGTTCTTGATATTACAG
Seq A exon
CGGAAGATCCATCCAAAAGCTATGTGAAATTGAGAGACTTTGTGCTTGTGAAGTTTTGTCAAGATTTGCCCTGTTTTTCCCGGGAAAAGTTAATGCAAGGATTCAGTGAAGATATGGCAATAGAGGCTCAACAGAAGTTCAAAATAAATAAG
Seq C2 exon
CAACATGCTAGACGGGTTTATGAAATTCTTCGACTACTGGTAACTGACATGAGTGATGCTGAACAATACAGAAGCTATAGACTGGATATTAAAAGAAGACTAATTAGCCCATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010118-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(36.0=100)
A:
PF135081=Acetyltransf_7=PD(21.0=41.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATGCTGATATTGACTCCATTT
R:
ATCCAGTCTATAGCTTCTGTATTGT
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]