DreEX0036889 @ danRer10
Exon Skipping
Gene
ENSDARG00000034916 | hat1
Description
histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
Coordinates
chr9:3330639-3339052:+
Coord C1 exon
chr9:3330639-3330745
Coord A exon
chr9:3332826-3332977
Coord C2 exon
chr9:3338936-3339052
Length
152 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTCTGCTCTGCAGCGG
3' ss Score
8.71
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CCAGATGCTGATCTTACCACCTTTCCAGGGAGAAGGCCACGGGGCTCAGCTGTTAGAGACCGTCCACAGATACTACTGCACATCTCCTAAAGTGCAGGACATCACAG
Seq A exon
CGGAAGATCCATCTGAAAACTATGTGAAGCTGAGGGACTTTGTGCTGGTGAAGCTCTGCTTGACTCTGCCGTCATTTGCCAGCGAGAAACTTTCCCAGGGTTTCAGTGAAGAGATGGCATCTGAGGCCAGAGAGAAACTCAAGATCAACAAG
Seq C2 exon
AAACATGCACGACGTGTTTATGAGATTCTGCGTCTCCGAAATACAGACATGAACGATGAGAAGAAAGCCCGAGAGTTTCGCTTGGAGGTGAAAAAGCGGCTCTTCGGACCCTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034916-'12-14,'12-11,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.026
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(23.4=100),PF049058=NCD2=PU(10.1=37.8)
A:
PF135081=Acetyltransf_7=FE(32.5=100),PF049058=NCD2=FE(36.0=100)
C2:
PF135081=Acetyltransf_7=PD(16.2=64.1),PF049058=NCD2=FE(27.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGCTGATCTTACCACCT
R:
TCTGTAGGGTCCGAAGAGC
Band lengths:
224-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]