MmuEX6102108 @ mm9
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71259690-71276869:+
Coord C1 exon
chr2:71259690-71259796
Coord A exon
chr2:71272112-71272263
Coord C2 exon
chr2:71276753-71276869
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTTTCATTTTTTAGCGG
3' ss Score
9.91
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTTCATAGATACTACATTTCATTTCCTACAGTTCTTGATATTACAG
Seq A exon
CGGAAGATCCGTCCAGAAGCTATTTGAAACTAAGAGACTTTGTGCTTGTGAAGTTTTGTCAATTTTTGCCCAGTTTCTCCCGGGAAAGATTACTGCAAGGATTCAGTGAAGATATGGCAATACAGGCACAGCAAATGTTCAAAATAAATAAG
Seq C2 exon
CAACATGCTAGAAGGGTTTATGAAATTCTTCGACTGCTGGTGACTGACATGAGCGATGCTGAGCAATACAGAAGCTACAGACTGGATATTAAAAGAAGACTAATTAGCCCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018-'12-16,'12-13,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(36.7=100)
A:
PF135081=Acetyltransf_7=PD(20.4=39.2)
C2:
PF138371=Myb_DNA-bind_4=PU(16.4=28.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGCTGATACTGACTCCA
R:
CTTGTAAGGGCTAATTAGTCTTCTTT
Band lengths:
224-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: