MmuEX6102108 @ mm10
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71421633-71438812:+
Coord C1 exon
chr2:71421633-71421739
Coord A exon
chr2:71434055-71434206
Coord C2 exon
chr2:71438696-71438812
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTTTCATTTTTTAGCGG
3' ss Score
9.91
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTTCATAGATACTACATTTCATTTCCTACAGTTCTTGATATTACAG
Seq A exon
CGGAAGATCCGTCCAGAAGCTATTTGAAACTAAGAGACTTTGTGCTTGTGAAGTTTTGTCAATTTTTGCCCAGTTTCTCCCGGGAAAGATTACTGCAAGGATTCAGTGAAGATATGGCAATACAGGCACAGCAAATGTTCAAAATAAATAAG
Seq C2 exon
CAACATGCTAGAAGGGTTTATGAAATTCTTCGACTGCTGGTGACTGACATGAGCGATGCTGAGCAATACAGAAGCTACAGACTGGATATTAAAAGAAGACTAATTAGCCCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(36.7=100)
A:
PF135081=Acetyltransf_7=PD(20.4=39.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGCTGATACTGACTCCA
R:
CTTGTAAGGGCTAATTAGTCTTCTTT
Band lengths:
224-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types