GgaEX6042322 @ galGal4
Exon Skipping
Gene
ENSGALG00000009525 | HAT1
Description
histone acetyltransferase type B catalytic subunit [Source:RefSeq peptide;Acc:NP_989538]
Coordinates
chr7:17396173-17400201:-
Coord C1 exon
chr7:17400095-17400201
Coord A exon
chr7:17397555-17397706
Coord C2 exon
chr7:17396173-17396289
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTTATAATTTTTTTTTCTAGCTG
3' ss Score
9.1
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
CCAGATGCTGATCTTGCCACCATTCCAAGGAGAAGGCCATGGTGCTCAGCTTCTTGAAACAGTTCATAGATACTATATGTCTTCTCCTACAGTACTTGATATAACAG
Seq A exon
CTGAAGATCCATCTGAAAACTACATAAAGCTAAGAGACTTTGTTCTTGTAAAGCTCTGTCAAGACTTGCCTTGCTTTTCCCCAGCAAAGTTAATGCAAGGCTTCAGCCAAGAAATGGTAATGGAAGCTCAACAGAAGCTGAAAATAAATAAG
Seq C2 exon
CAACACACAAGGCGAGTATATGAAATTCTCCGATTGCGTGCAACAGATATGGGCGATGCAGAACAATCCAGAAGCTACCGGTTGGATGTTAAAAGAAGGCTGATTGGCCCCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009525-'20-21,'20-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.026
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(38.3=100)
A:
PF135081=Acetyltransf_7=PD(13.8=25.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATCTTGCCACCATTCC
R:
GCCAATCAGCCTTCTTTTAACATCC
Band lengths:
210-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]