RnoEX6017383 @ rn6
Exon Skipping
Gene
ENSRNOG00000001524 | Hat1
Description
histone acetyltransferase 1 [Source:RGD Symbol;Acc:1305716]
Coordinates
chr3:58052362-58067040:+
Coord C1 exon
chr3:58052362-58052468
Coord A exon
chr3:58062329-58062480
Coord C2 exon
chr3:58066924-58067040
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTTTCATTTTTTAGCGG
3' ss Score
10.5
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCATGGTGCTCAACTTCTTGAAACAGTTCATAGATACTACATTGCATCTTCTTCAGTTCTTGATATTACAG
Seq A exon
CGGAAGATCCATCCAAAAGCTATGTGAAACTAAGAGACTTTGTACTTGTGAAACTTTGTCAAGATTTGCCCTGTTTCTCCCGGGAAAGATTACTGCAAGGATTCAATGAAGATATGGCGATACAGGCACAGCAGAAGTTCAAAATAAATAAG
Seq C2 exon
CAACATGCTAGACGGGTTTATGAAATTCTCCGACTGCTGGTGACTGACATGAGTGACGCGGAGCAGTGCAGAAGCTACAGACTGGATATTAAAAGGAGACTAATCAGCCCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001524-'10-16,'10-12,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(39.6=100)
A:
PF135081=Acetyltransf_7=PD(14.3=25.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGCTGATACTGACTCCA
R:
TGTAAGGGCTGATTAGTCTCCT
Band lengths:
222-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]