BtaEX6009086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25045500-25047878:-
Coord C1 exon
chr2:25047795-25047878
Coord A exon
chr2:25046952-25047107
Coord C2 exon
chr2:25045500-25046195
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTCTGTTCCCTAAGACT
3' ss Score
5.98
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATGAAAACCTACCCACTGTTACAGCTTCTGGACGGGTGGTAAAAAGAAGTTTTACCATTCTGGATGATGACCCAGAACAAGAG
Seq A exon
ACTTTCAAAATTGTCGACTATGAAGATGAGTTGGATTTGCTTTCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTAATGAATATGGAACTTTACTTAAAAGTATTCCACTCATGGAGTCATGGGATGTG
Seq C2 exon
ACATATAGCCATGAAGTCTACTTTGACAGAGACTTGGTGCTCCACATAGAGCAGAAGCCCAGCAGGGTCTTCAGCTGCTATGTTTACCAAATGGTATGTGACCCTGGGGAAGAAGAAGAAACCACAGACAAAAGGAATAAAACAGATCACAATAATTTTACATTTTGAGATGTAACTTATGAGACTTCTAGCCAAACACCCCAGGAGCCATGGCCAGTCCTCTTTTTTATCATCTGCATAGTATATTCTCCAGTGTTTTCCAGAAAAGGTCTTGTGTTGACTTCAGACATTTGTGACTTCTTTTTTAAACTCTGGCCATACAAGGTGGTGAGGACTTCACTTTATATAAAGGTTTTTACAATAACATCCCAAGAAGCCTAGCATTTTGCAGTTTTTTAGGTGGGTGGTGATGCAAATATAAAATACTAAAGGTCAGAGAAGGAAAGTTAATTCTAATTATTTGGAGGTCATTGATTAGGGGGTGTTTTGCATGGTTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'20-20,'20-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTCTGGATGATGACCCAGA
R:
AAAAAGAGGACTGGCCATGGC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]