GgaEX1018816 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17519610-17522590:-
Coord C1 exon
chr7:17522507-17522590
Coord A exon
chr7:17521040-17521195
Coord C2 exon
chr7:17519610-17520302
Length
156 bp
Sequences
Splice sites
3' ss Seq
TAAGGCTTTGTTTTCCCTAGACA
3' ss Score
7.76
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTGAACAACTCTGTTACTGTAACATCTTCTGGTCGAGTGGTGAAAAAGCGTATTAACTTGCTGGATGATGATCCAGAACAAGAG
Seq A exon
ACATTCAAAATTGTAGACTATGAAGATGAACTGGATTTGTTATCCACTGTGGCAGTTACTGAAATAGGAGCTGATGGAAGAGCTCACCTTGATTTACGCTGTAATGAACATGGGATTCTACTTAAGAGTATTCCATTACGGGAATCCTGGGATGTG
Seq C2 exon
ACTTACAGTCATGAAGTTTACTTTGACAGAGATATTGTATTACACATAGAACAGAAGCCTAACAGGAAGTTCAGTTGTTATGTTTACCAAATGGTCTGCGATACTGCAAAAGAAGATGAATGTTCAAGGCGTGAAAGAACAGAAAGAGTGTCTTGTAAAAAAGGAGGGAGAATTTTTGAATATACTTAAGACATAACAACTACTTCAATTTTGATGTTATTTAAGGACTTCATATGTATTAATTAGTCAACTACTGTTTTCCAGCCAGTGTTTAACGTATTGTACCATTATACAAGGTTTTATCTTTTATTTTTTCCTCTCTCTCTAATTCTGTACTCTTGTCTGTAGACCATAATGGTTTTTCATGTATTCACCAGTTCATTAATGCTGGATATAGCATTTTTTGGTTCTTTTCAGCAACTGCATTGAAATACTGAACATCAAGAAGACAGATTTAGGCTTTCTGATCATCTACCATCTGCTGCATTCTATCTTATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACAACTCTGTTACTGTAACA
R:
TTACAAGACACTCTTTCTGTTCTTTC
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]