RnoEX0026368 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57670492-57673418:+
Coord C1 exon
chr3:57670492-57670575
Coord A exon
chr3:57671768-57671923
Coord C2 exon
chr3:57673080-57673418
Length
156 bp
Sequences
Splice sites
3' ss Seq
TACTTTCATCTGTCCCCCAGACT
3' ss Score
7.99
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AAGGAAAACTTAATCACGGTTACAGCTTCTGGACGTGTGGTGAAACGAAATGTCAACCTTCTGGATGATGACCCAGAACAGGAG
Seq A exon
ACTTTCAAAGTCGTGGACTATGAAGATGAGTTGAACTTGCTTTCCGTAGTGGCTGTCACTCAAATAGATGCAGAAGGGAAAGCTCACCTGGATTTCCACTGTAACGAGTATGGAACCTTACTCAAAAGCATCCCACTAGTGGAGTCATGGGATGTG
Seq C2 exon
ACCTATAGCCATGAAGTCTACTTTGACAGAGATTTGGTGCTGCACATCGAACAGAAGCCCAACAGGGTCTTCAGCTGCTATGTTTACCAGATGGTCTGTGACCCTGGAGAAGAGGAGGAAACTGTCAACAGAAGCGATTAAGACAGTGAGATCATCATAACTTGAAACATTGGTGAAACCTCAATCAGCTGTGTCTAGTCCTCATTATCTGCATGGAACATTCTACAGTATTTTCCAGAACAGGTCTTGTGCTAGCTTCAAAGGACTAGGTTATACTCACCACGTACAGTGGTAAGGACTCCATCTGATGTAAATGCTCTCTAGGATGCTGTCCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGTGTGGTGAAACGAA
R:
ACAGCTGATTGAGGTTTCACCA
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]