HsaEX0018623 @ hg19
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172334497-172341562:+
Coord C1 exon
chr2:172334497-172334580
Coord A exon
chr2:172336548-172336703
Coord C2 exon
chr2:172337484-172341562
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTATCTATCTATCCCAAAGACT
3' ss Score
5.65
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATGAAAATGTACTCACTGTTACAGCTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATGATGACCCAGAACAAGAG
Seq A exon
ACTTTCAAAATTGTGGACTATGAAGATGAGTTAGATTTGCTTTCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTAATGAATATGGAACTTTACTTAAAAGCATTCCACTAGTGGAGTCATGGGATGTG
Seq C2 exon
ACATATAGCCATGAAGTCTACTTTGACAGAGACTTGGTGCTACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACCAGATGATATGTGACACTGGGGAAGAAGAAGAAACCATAAACAGAAGCTGTTAAAAAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCATTTTATTATCTGCATGGCACATTCTCCAGTATTTTCCAAAAAAGTCTTGTGTTGACTTCAGATGACTATGACTTCTTTTTTAAACTCTTGCTGTAAAAGATGGTGAGGACTTCATTTTTTTTAAAGGTTTTTTAGAATACTGTTCCAAGAAGTTTAGTGTTTTGCAGCTTTGAGCTAGGTGGTAATGCAAATATAAAATGCTGGGAACAGAAAAGGACAGGTTAATTCCAATTGTTGAGGAGTTAAGTCATTGATGGGGTGGGTCATTGATGAGTTCTTAAAGGATGGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACAGCTTCTGGACGGGTG
R:
TGCTGGGGTGTTTGGCTAAAA
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)