MmuEX0013826 @ mm10
Exon Skipping
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71087315-71095858:+
Coord C1 exon
chr2:71087315-71087398
Coord A exon
chr2:71088347-71088502
Coord C2 exon
chr2:71089789-71095858
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTTTCATCTGTTCCCCAAGACT
3' ss Score
5.16
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AAGGAAAATTTAATCACCGTTACAGCTTCTGGACGTGTGGTGAAAAGAAATGTCAGCCTTCTGGATGATGACCCAGAACAAGAG
Seq A exon
ACTTTCAAAATCGTGGACTATGAAGATGAGTTGGACTTACTTTCCGTAGTAGCTGTCACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTAATGAATATGGAACCTTACTCAAAAGCATCCCACTAGTGGAGTCATGGGATGTG
Seq C2 exon
ACATATAGCCATGAAGTCTACTTTGACAGAGATTTGGTGCTGCACATCGAACAGAAGCCCAACAGGGTCTTCAGCTGCTATGTTTACCAGATGGTCTGTGACCCTGGAGAAGAGGAGGAAGCTGTCAACAGAAGTGGTTAAGACAGTGAGTCATTGTAACTTGAGACTTGGTTAAAAAAACGAGCCTCAGTCAGCTGTAACTAGTCCTCATTATCTGCATGGAACATTCTGCAGCATTTTCCAGAACAAGTCTTGTGCTAGCTCCAAAGGACTAGGTTGAACTCTTACCACATATGGTAGAAAGGACTCCATCTTATGTAAAAGCTCCCTAGGATGCTGTCCCAAGAGACCAAGCATTTTGAAACATTTCCATTAGGTGCTAACGTGAATATAAAATGCTAGGGAACCGAGGACAGTTATCTAGGAGTCAAAGAGACATCATTGATGCAGGGATAACTAATTCTTAAAGACTACTATAAAGTTTTAATTAGTAAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGGACGTGTGGTGAAA
R:
AGCTGACTGAGGCTCGTTTTT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types