DreEX0025854 @ danRer10
Exon Skipping
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3529667-3532522:-
Coord C1 exon
chr9:3532374-3532522
Coord A exon
chr9:3531436-3531591
Coord C2 exon
chr9:3529667-3529814
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATACTTATTATAATACCTAGACG
3' ss Score
2.54
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
GGCATTTTGTCATCTACAGTTTGACTCAAGGGTTTATATCGGTGATGAATTCTTCTTCCTCTCAGCAGGCCTCTCAGGTGATTGTGACCTCTTCTGGCCGTACAGTTAAAAGGAGATTTCAGATGTTAGACGATGACCCTGCACAAGAG
Seq A exon
ACGTTCAGAATGGTGAAGTATGAAGACGAGCTTGATCTGCTGGCTGTGGTGGACATCACTCACGCTGAAGATGAAGGACAGGCTCGTCTTCGCCTGCATGACAATAAAACAGGCGCTTTAATGAAGAGAGTTCCTCTGGAGGAGCCCTGGGATGTG
Seq C2 exon
ACCTACAGTCACGAGGTGTACTTTGACAGAGACACCATTATTCACACTGTCCAGGAGAAGAACAACAGCTTCTGTTGCCATGTTTATAAAATGAAGAGACCAGCTTCAGACCAACCATAATGAGCATGCTTCATATCATGTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.077 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCTACAGTTTGACTCAAGGGT
R:
TGGTTGGTCTGAAGCTGGTCT
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]