BtaEX6009110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007258 | GAD1
Description
Bos taurus glutamate decarboxylase 1 (brain, 67kDa) (GAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075756]
Coordinates
chr2:25674348-25684185:-
Coord C1 exon
chr2:25684041-25684185
Coord A exon
chr2:25680733-25680795
Coord C2 exon
chr2:25674348-25674506
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCACGTCTCTTGCTTTCTAGCGT
3' ss Score
7.96
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCTTTTCTAGTGCCCGACCGGCCGAGGACCCCGGACAGCAGAGGCCTCGGGACGACCGAGCTGATGGCGTCTTCGACCCCTTCTTCGTCCGCAACCTCCTCGAACGCGGGAGCGGACCCCAATACTACCAACCTGCGCCCCACAA
Seq A exon
CGTATGACACCTGGTGCGGCGTGGCCCATGGATGCACCAGAAAACTGGGGCTGAAGATCTGCG
Seq C2 exon
GCTTTTTGCAGAGGACCAACAGCCTGGAAGAGAAGAGCAGGCTTGTGAGTGCCTTCAAGGAGAGGCAGTCCTCCAAGAACCTGCTTTCCTGTGAAAACAGTGACAAGGATGGCCGCTTCCGCCGCACAGAGACAGACTTCTCCAACCTGTTCGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007258-'5-4,'5-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAATACTACCAACCTGCG
R:
CGGCCATCCTTGTCACTGTTT
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]