MmuEX0019929 @ mm9
Exon Skipping
Gene
ENSMUSG00000070880 | Gad1
Description
glutamic acid decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70401825-70410921:+
Coord C1 exon
chr2:70401825-70401967
Coord A exon
chr2:70405243-70405305
Coord C2 exon
chr2:70410763-70410921
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTGCTCCTAGCGT
3' ss Score
10.43
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CCTGTTCCTGCGCCCAGTCTGCGGGGGACCCTTGAACCGTAGAGACCCCAAGACCACCGAGCTGATGGCATCTTCCACTCCTTCGCCTGCAACCTCCTCGAACGCGGGAGCGGATCCTAATACTACCAACCTGCGCCCTACAA
Seq A exon
CGTATGATACTTGGTGTGGCGTAGCCCATGGATGCACCAGAAAACTGGGCCTGAAGATCTGTG
Seq C2 exon
GCTTCTTACAAAGGACCAATAGCCTGGAAGAGAAGAGTCGTCTTGTGAGCGCCTTCAGGGAGAGGCAGTCCTCCAAGAACCTGCTTTCCTGTGAAAACAGTGACCAGGGTGCCCGCTTCCGGCGCACAGAGACCGACTTCTCCAACCTGTTTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880-'4-9,'4-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=0.002 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTACCAACCTGCGCCCTA
R:
GCACCCTGGTCACTGTTTTCA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: