GgaEX6042347 @ galGal3
Exon Skipping
Gene
ENSGALG00000009589 | Q9YI58_CHICK
Description
NA
Coordinates
chr7:19679733-19686053:-
Coord C1 exon
chr7:19685904-19686053
Coord A exon
chr7:19683595-19683657
Coord C2 exon
chr7:19679733-19679891
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGCCCTCTCTTGCAGCCT
3' ss Score
12.11
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TAAATTCCTCGCTGCCCACTCGCCCTCGGAGGAATATCGAAGGAAAGGCGAACTCCGAGCGCTGGGGCTCTTTTGAAGGGATGGCTTCCTCCGCTCCCTCGTCCTCCAACGACGCTCCGGACCCCGCCCCGACCAATTTACGACCCACAA
Seq A exon
CCTACGACTCGTGGTGCGGCGTGGCGCACGGATGCACCAGGAAGATCGGCCTGAAGATATGCG
Seq C2 exon
GGTTCCTGCAGAGGACCAACAGCCTGGAAGACAAAGGCCGGATCGTGGGCTCCCTGAAGGAGCGGCAGTCCTCCAAGAACCTGCTGGCGTGCGAGAACAGCGAGCGGGAAGCCCGGTTCCGCCGCACCGAGACAGACTTCTCCAACCTGTATGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAAAGGCGAACTCCGAG
R:
TTGTCTTCCAGGCTGTTGGTC
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]