DreEX0034069 @ danRer10
Exon Skipping
Gene
ENSDARG00000093411 | gad1a
Description
glutamate decarboxylase 1a [Source:ZFIN;Acc:ZDB-GENE-070912-472]
Coordinates
chr9:3675259-3681730:-
Coord C1 exon
chr9:3681649-3681730
Coord A exon
chr9:3679308-3679367
Coord C2 exon
chr9:3675259-3675411
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGGTCGTTTTCTCCCTTTAGACT
3' ss Score
9.24
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGGCGGCGTCTGCACCCTCCTCCTCCTCTTCTGGCGGCGTTCCGGATCCCAACTCGACAAATTTACAGCCACCTTCCTCAA
Seq A exon
ACTACGACTGGAGTGGAGTCGCTCATGGATGTACAAGGAAGCTTGGAATGAAGATATGTG
Seq C2 exon
GGTTCTTGCAGAAGAACAATAATGTTGACGACAAGGGTCGAATTGTCGGGTTGTTTAACGACCAGCAGCCCAGGAGTATTTTAACCCGGGACAACGAGCGAGATTCCCGCTTCAGACGCACAGAGACGGACTTCTCCAATCTGTATGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093411_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.100 C2=0.202
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCCTCCTCCTCTTCTG
R:
GCTGGTCGTTAAACAACCCGA
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]