GgaEX6042347 @ galGal4
Exon Skipping
Gene
ENSGALG00000009589 | GAD67
Description
glutamate decarboxylase 1 [Source:RefSeq peptide;Acc:NP_990244]
Coordinates
chr7:17717739-17723499:-
Coord C1 exon
chr7:17723350-17723499
Coord A exon
chr7:17721601-17721663
Coord C2 exon
chr7:17717739-17717897
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGCCCTCTCTTGCAGCCT
3' ss Score
12.11
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TAAATTCCTCGCTGCCCACTCGCCCTCGGAGGAATATCGAAGGAAAGGCGAACTCCGAGCGCTGGGGCTCTTTTGAAGGGATGGCTTCCTCCGCTCCCTCGTCCTCCAACGACGCTCCGGACCCCGCCCCGACCAATTTACGACCCACAA
Seq A exon
CCTACGACTCGTGGTGCGGCGTGGCGCACGGATGCACCAGGAAGATCGGCCTGAAGATATGCG
Seq C2 exon
GGTTCCTGCAGAGGACCAACAGCCTGGAAGACAAAGGCCGGATCGTGGGCTCCCTGAAGGAGCGGCAGTCCTCCAAGAACCTGCTGGCGTGCGAGAACAGCGAGCGGGAAGCCCGGTTCCGCCGCACCGAGACAGACTTCTCCAACCTGTATGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589-'1-5,'1-1,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAAAGGCGAACTCCGAG
R:
TTGTCTTCCAGGCTGTTGGTC
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]