RnoEX0037480 @ rn6
Exon Skipping
Gene
ENSRNOG00000000007 | Gad1
Description
glutamate decarboxylase 1 [Source:RGD Symbol;Acc:2652]
Coordinates
chr3:56862989-56871811:+
Coord C1 exon
chr3:56862989-56863131
Coord A exon
chr3:56866361-56866423
Coord C2 exon
chr3:56871653-56871811
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTCTCTGCTCCTAGCAT
3' ss Score
8.64
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CCCGTTCCTGCGCCCAGACCGCGGGGGACACTTGAACAGTAGAGACCCCAAGACCACCGAGCTGATGGCATCTTCCACGCCTTCGCCTGCAACCTCCTCGAACGCGGGAGCGGATCCTAATACTACCAACCTGCGTCCTACAA
Seq A exon
CATATGATACTTGGTGTGGCGTAGCCCATGGATGCACCAGAAAACTGGGCCTGAAGATCTGTG
Seq C2 exon
GCTTCTTGCAAAGGACCAATAGCCTGGAAGAGAAGAGTCGTCTTGTGAGTGCCTTCAGGGAGAGGCAGGCCTCCAAGAACCTGCTTTCCTGTGAAAACAGTGACCCTGGTGCCCGCTTCCGGCGCACAGAGACGGACTTCTCCAACCTGTTTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000007-'8-6,'8-2,14-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCAACCTGCGTCCTACA
R:
GCACCAGGGTCACTGTTTTCA
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]