BtaEX6009129 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26097092-26223999:-
Coord C1 exon
chr2:26223854-26223999
Coord A exon
chr2:26136636-26136701
Coord C2 exon
chr2:26097092-26097247
Length
66 bp
Sequences
Splice sites
3' ss Seq
AAAATGTTTTTGTTTTTCAGAAA
3' ss Score
9.28
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCATTGCTTGTGAGCAGCAGTATGACTCTTCCTATGACGCTCGCTGTGACGTCTGGTCCTTGGGGATCACAGCTATTGAACTGGGGGACGGAGATCCTCCCCTCTTTGACATGCATCCTGTGAAAACGCTCTTTAAGATTCCAAG
Seq A exon
AAATCCTCCACCTACTTTACTTCATCCGGAAAAATGGTGTGAAGAATTCAACCACTTCATTTCACA
Seq C2 exon
GTGTCTCATTAAAGATTTTGAAAAGCGACCTTCGGTCACGCATCTCCTCGACCACCCATTTATTAAAGGAGTCCACGGAAAGCTTTTGTTTCTGCAGAAGCAGCTGGCTAAGGTCCTCCAAGACCAGAAGCATCTAAATCCTGTTGTTAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626-'7-7,'7-6,11-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.075
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=PD(7.9=39.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCCTCTTTGACATGCA
R:
TCTTGGAGGACCTTAGCCAGC
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]