MmuEX6102035 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70126847-70217170:+
Coord C1 exon
chr2:70126847-70126992
Coord A exon
chr2:70189543-70189608
Coord C2 exon
chr2:70217015-70217170
Length
66 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTTTTTCTTTCAGAAA
3' ss Score
11.49
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCATTGCTTGCGAGCAGCAGTATGACTCGTCCTATGACGCTCGTTGTGACGTCTGGTCCTTGGGCATCACAGCCATTGAGCTGGGAGATGGAGACCCTCCCCTCTTTGAAATGCATCCTGTGAAAATGCTCTTTAAGATACCAAG
Seq A exon
AAACCCTCCACCCACTTTGCTGCACCCTGACAGCTGGTGTGAGGAATTTAACCACTTCATTTCACA
Seq C2 exon
GTGTCTTATTAAAGATTTTGAAAAGCGGCCTTCGGTCACCCATCTCTTGGACCACCCATTCATTAAAGGAACTCAAGGCAAGGTTTTGTGTCTGCAAAAACAGCTGGCCAAGGTGCTCCAGGACCAGAAGCATCGAAACCCTGTTGCTAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'16-16,'16-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=PD(7.9=39.6)
Main Skipping Isoform:
ENSMUST00000060208fB13269
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCATTGAGCTGGGAGATG
R:
TGCAGACACAAAACCTTGCCT
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types