GgaEX0014222 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17884583-17918951:-
Coord C1 exon
chr7:17918806-17918951
Coord A exon
chr7:17897629-17897694
Coord C2 exon
chr7:17884583-17884738
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCCAAAACTTTGTTTTTCAGAAA
3' ss Score
7.57
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCATTGCTTGTGAACAGCAATATGACTACTCATATGATGCTCGATGTGACGTATGGTCTTTGGGAATAACAGCTATTGAACTCGGGGATGGAGACCCTCCTTTATTTGACATGCATCCGGTGAAAACTCTTTTTAAAATTCCAAG
Seq A exon
AAACCCTCCTCCTACTTTGCTACATCCTGAAAAATGGTGCAGGGGATTCAACCATTTCATTTCACA
Seq C2 exon
GTGTCTTATCAAGGATTTCGAGAAACGTCCTACAGTCACCCACCTTTTGGAGCATCCATTTATTAAACAAGTGCATGGTAAAGATATGTCCCTGCAAAAACAGCTGGCTGAGCTTATCCAAGAACAGCAGCGACTAGGCTCTGTAGCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'16-17,'16-14,18-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.072 C2=0.063
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=PD(7.9=39.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACTCGGGGATGGAGACC
R:
CTCAGCCAGCTGTTTTTGCAG
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]