DreEX6034849 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3853495-3881081:-
Coord C1 exon
chr9:3880936-3881081
Coord A exon
chr9:3863092-3863157
Coord C2 exon
chr9:3853495-3853650
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTTTTATCTGCAGGAA
3' ss Score
12.39
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGATAGCGTGTGAACAGCAGTATGACTACTCGTATGACGCCCGCTGTGATGTGTGGTCGCTGGGCATCACTGCTATAGAGCTGGCAGACGGAGACCCACCACTGGCAGAGATGCACCCGGTCAAAGCACTCTTCAAAATACCACG
Seq A exon
GAACCCGTCTCCTACCCTCCGCCATCCTGAGCAATGGTGCAGAAGCTTCAGTCACTTCATTGCACA
Seq C2 exon
GTGTTTGATAAAGGATTTTGAGACTCGTCCTTCAGTGACGCATCTACTGGAGCATCCGTTCATCAAACAGGCTCATGGGAAAGACACGTTGCTCAGACAGCAGCTGTCGGTCCTTATACGTGAGCAGCAGGACGTGGGCAGCAGGACCAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.132 C2=0.090
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=PU(46.5=90.9)
C2:
PF0006920=Pkinase=PD(48.8=40.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGCACCCGGTCAAAG
R:
GCTGCTCACGTATAAGGACCG
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]