RnoEX0057369 @ rn6
Exon Skipping
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56387408-56487655:+
Coord C1 exon
chr3:56387408-56387553
Coord A exon
chr3:56458681-56458746
Coord C2 exon
chr3:56487500-56487655
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTCCTTTTAGAAA
3' ss Score
11.8
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCATTGCTTGTGAGCAGCAGTATGACTCGTCCTATGACGCTCGCTGTGACGTCTGGTCCTTGGGCATCACAGCCATCGAGCTGGGCGATGGAGACCCTCCCCTCTTTGAAATGCATCCTGTGAAGATGCTCTTTAAGATCCCAAG
Seq A exon
AAACCCTCCACCCACTTTGCTGCACCCGGACAACTGGTGTGAGGAGTTTAACCACTTCATTTCACA
Seq C2 exon
GTGTCTTATTAAAGATTTTGAAAAGCGGCCTTCGGTCACCCATCTCCTGGATCACCCATTCATTAAAGGAACTCAAGGCAAGGTTTTGTTTCTTCAAAAACAGCTGGCCAAGGTGCTCTGGGACCAGAAGCATCAAAACCCTGTTGCTAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-'6-8,'6-6,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=PD(7.9=39.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCTCCCCTCTTTGAA
R:
ACCTTGGCCAGCTGTTTTTGA
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]