HsaEX6016666 @ hg38
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170235991-170369377:+
Coord C1 exon
chr2:170235991-170236136
Coord A exon
chr2:170335385-170335450
Coord C2 exon
chr2:170369222-170369377
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATTGCTGTTATTTTTTCAGAAA
3' ss Score
8.97
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCATTGCCTGTGAGCAGCAGTATGACTCTTCCTATGACGCTCGCTGTGACGTCTGGTCCTTGGGGATCACAGCTATTGAACTGGGGGATGGAGACCCTCCCCTCTTTGACATGCATCCTGTGAAAACACTCTTTAAGATTCCAAG
Seq A exon
AAATCCTCCACCTACTTTACTTCATCCAGAAAAATGGTGTGAAGAATTCAACCACTTTATTTCACA
Seq C2 exon
GTGTCTTATTAAGGATTTTGAAAGGCGACCTTCCGTCACACATCTCCTTGACCACCCATTTATTAAAGGAGTACATGGAAAAGTTCTGTTTCTGCAAAAACAGCTGGCCAAGGTTCTCCAAGACCAGAAGCATCAAAATCCTGTTGCTAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'8-21,'8-16,12-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.195
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=PD(7.9=39.6)
Main Skipping Isoform:
ENST00000408978fB20570
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCCTATGACGCTCGCT
R:
TGGGTGGTCAAGGAGATGTGT
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains