BtaEX6009148 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26519709-26526188:-
Coord C1 exon
chr2:26526030-26526188
Coord A exon
chr2:26520317-26520460
Coord C2 exon
chr2:26519709-26519758
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAATGTACTTTAAATATTAGGTC
3' ss Score
4.73
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CAGCTGATGTTCCATCAGAGAAAGACCTTAATAAAGTCCTTCAGCTTTTGGAACCTCAAATTTCCTTTTTAGAAGATCTAACTAAAATGGGAGGAGCAATGCGATCTGTTCTTACTCAGGTTTTAACAAACCAACAAAACTACAAAGATCTGACTTCTG
Seq A exon
GTCTTGGAGAAAATGCTTGTGCAAGGAAGAGTCATGAAAAATACCTTATAGCTTTGAAGAGCTCTGGACTTACATATCCTGAGGATAAACTTGTATACGGTATACAAGAGCCATCTGCTGGCGCTAGCACTCTGGCAGTTCAAG
Seq C2 exon
GTTTTGCAAGTGCAGCAGGAACATTGGGACAACTAGATTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTCCATCAGAGAAAGACCT
R:
TCATCTGAAGAATCTAGTTGTCCCA
Band lengths:
204-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]