RnoEX0096085 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56152550-56161165:+
Coord C1 exon
chr3:56152550-56152705
Coord A exon
chr3:56160448-56160591
Coord C2 exon
chr3:56161116-56161165
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACTTTGTCTTCAATATTAGGTC
3' ss Score
8.2
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTGATACACCATCAGAAAAAGATCTGAACAAAGTCCTTCAGCTTTTGGAGCCTCAGATTTCCTTTTTAGAAGACCTGACTAAAACGGGAGGAGCAATGAGGGCTGTTCTCACTCAGGTGCTGACAAACCAGCAGAGCTACAAAGACCTGACTGCTG
Seq A exon
GTCTTGGAGAAAATACTTGTGCAAAGAAGAGTCATGAGAAGTACCTTATAGCTTTGAAGAGCTCCGGACTCACGTATCCTGAGGATAAGCTTGTGTACGGGATACAGGAGCCGTCTGCTGGCACTAGCACTCTGGCAGCTCAAG
Seq C2 exon
GCTTTGCAGGTGCTACTGGGACACTGGGTCAGATAGACTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.020 C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATACACCATCAGAAAAAGATCTGA
R:
ATCTGAAGAGTCTATCTGACCCAGT
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]