HsaEX0068975 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170732301-170735084:+
Coord C1 exon
chr2:170732301-170732459
Coord A exon
chr2:170734004-170734147
Coord C2 exon
chr2:170735035-170735084
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGAAGTTTGTTTTAATTAGGTC
3' ss Score
6.19
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CAGCTGATGGACCATCAGAAAAGGACCTTAACAAAGTCCTTCAGCTTTTGGAACCTCAAATTTCCTTTTTAGAAGACCTGACTAAAATGGGAGGAGCAATGCGGTCTGTTCTTACTCAGGTTTTGACAAACCAACAAAACTACAAAGATCTGACTTCTG
Seq A exon
GTCTTGGAGAAAATGCTTGTGTAAAGAAAAGTCATGAAAAGTACCTTATAGCTTTAAAGAGCTCTGGACTTACATATCCTGAGGATAAGCTTGTATATGGTGTGCAGGAGCCATCTGCTGGTACTAGTTCTCTGGCTGTTCAAG
Seq C2 exon
GTTTCATAGGCGCAACAGGAACTTTGGGACAAGTGGATTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGACCATCAGAAAAGGACC
R:
CATCTGAAGAATCCACTTGTCCCA
Band lengths:
203-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)