GgaEX7005990 @ galGal4
Exon Skipping
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18054548-18057154:-
Coord C1 exon
chr7:18056996-18057154
Coord A exon
chr7:18055182-18055325
Coord C2 exon
chr7:18054548-18054597
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTTTAATGCTTATTCAAGGTG
3' ss Score
5.25
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTCTTGATCTGCCATCAGAGAAAGACCTTCATAAAATCCTCCAGGTTTTGGAGCCTCACGTTTCCTTTCTAGAAGACTTGACCAAAATGGGAGGAGCAATGCGATCAGTTCTTACCCAGGTTTTGACTAGCCAACAGTTCTACAAAGATCTCAGCACTG
Seq A exon
GTGTTGGAGAGAATGCATGTGCGAAGAAAAGTCATGAGAAGTACCTCATTGCTTTGAAAGGCTCAGGACTGGCATTTCCTGAGGATAAACTTGCATGTGGTATGGAGGAGCAAGGAGCTGGTACTAGCACACTAGCCGTTCAAG
Seq C2 exon
GTTTAGCAGGTGCTACAGCAACATCAGGACAAGGAGATTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015660fB13427
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCATCAGAGAAAGACCT
R:
CTCATCTGAAGAATCTCCTTGTCCTG
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]