BtaEX6009204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26768479-26769915:+
Coord C1 exon
chr2:26768479-26768607
Coord A exon
chr2:26769304-26769435
Coord C2 exon
chr2:26769802-26769915
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTTTAAATTTCAGTTA
3' ss Score
7.69
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTGTATTGGATCCTCTCGTGTTAGTGTTTCTTGGTTACTCTTTGGCCACGCTTCAGTATTTTCCCGAAGACCTATTGAAGGCAATTTTTAACATCAAATTCTTAGCTAGATTAGATTCTCAACTTGAAC
Seq A exon
TTATATATTCGTCTCTAAATATGAAGATCCAATTTCGTCTTATGGAATTAAATAGAGCAGTCTGCTTGGAATGTCCTGAATATCAGATTCCGTGGTTTCATGACCGCTTCTGTCAACAACACTATAATAAAG
Seq C2 exon
ATTTTGGCAGCATGAATGGAGCACAACAGCAGATTTATAAAATGTTAGCAGAGGTACTGGGAGGAATCAATTTTGTGAAAGCCTCCGTTCTTACACCTTATTACTACACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743-'20-15,'20-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PD(52.1=84.1)
A:
PF083687=FAST_2=PU(40.9=80.0)
C2:
PF083687=FAST_2=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATTGGATCCTCTCGTGT
R:
AGTAATAAGGTGTAAGAACGGAGGC
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]