HsaEX0024946 @ hg19
Exon Skipping
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170393737-170396689:-
Coord C1 exon
chr2:170396561-170396689
Coord A exon
chr2:170394523-170394651
Coord C2 exon
chr2:170393737-170393850
Length
129 bp
Sequences
Splice sites
3' ss Seq
TAGTATTTTATTAATTTCAGTTT
3' ss Score
5.1
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTATATTGGATCCTTTTATATTAGTGTTTCTTGGTTTCTCTTTGGCCACACTTGAATATTTTCCAGAAGATCTGCTAAAGGCAATTTTTAACATCAAATTCTTAGCTAGATTGGATTCTCAACTTGAAA
Seq A exon
TTTTATCTCCATCTCGAAGTGCAAGAGTCCAGTTTCATCTTATGGAGTTAAATAGATCAGTCTGCTTGGAATGCCCTGAGTTTCAGATTCCATGGTTTCATGACCGCTTCTGTCAACAATATAATAAAG
Seq C2 exon
GTATTGGTGGCATGGATGGAACACAACAGCAGATTTTTAAAATGTTAGCAGAGGTACTAGGAGGAATCAATTGTGTAAAAGCCTCGGTTCTTACGCCTTATTACCACAAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PD(52.1=84.1),PF083687=FAST_2=PU(40.2=79.5)
A:
PF083687=FAST_2=PU(40.2=79.5)
C2:
PF083687=FAST_2=FE(43.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCTTGGTTTCTCTTTGGCC
R:
ACTTTGTGGTAATAAGGCGTAAGA
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)