RnoEX6017312 @ rn6
Exon Skipping
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55933344-55934576:-
Coord C1 exon
chr3:55934448-55934576
Coord A exon
chr3:55933958-55934089
Coord C2 exon
chr3:55933344-55933457
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAATGTGTTCTTAATTTCAGTTT
3' ss Score
8.09
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTACATTGGATCCTGGGACATTAGTGTTTCTTGGTTTCTCTATGGCTACACTTGAATATTTTCCAGAAGATCTGCTAAAGAAAATGTTTAACATCGAGTTCCTAGCCAGATTAGATTCCCAGCTTGAAA
Seq A exon
TTTTACCTTCAAGTCTCAGTGCAAGGATCCAGTTCCGCCTTATGGAGTTAAATAGAGCCGTCTGCTTGGAGTGCCCCGAGCTGCAGGTCCCGTGGTTTCATGACCGCTTTTGTCAGCGACAGTTTAACAAAG
Seq C2 exon
ATACCGGTGTTATGAATGGAGCGCAACAACAGATCTATAAAATGTTAGCAGAGGTCCTGGGAGGACACCGATATGTAAAGCCTTCGACTCTTTCACCATATTACCACACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PD(52.1=84.1)
A:
PF083687=FAST_2=PU(40.9=80.0)
C2:
PF083687=FAST_2=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATTGGATCCTGGGACAT
R:
CACTGTGTGGTAATATGGTGAAAGA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]