DreEX0032143 @ danRer10
Exon Skipping
Gene
ENSDARG00000056128 | fastkd1
Description
FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
Coordinates
chr9:48557856-48563707:+
Coord C1 exon
chr9:48557856-48557984
Coord A exon
chr9:48560815-48560946
Coord C2 exon
chr9:48563594-48563707
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTATTGCCAACAGCCT
3' ss Score
6.04
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCTCCTTTGACCCTCACCTGCTGGTTCTGATGGCTCACGCATTGGCGATGGCTGATTACTTTCCAGAGGAGATGATCCGAGAAATATTCAGCGTTGACTTTCTAGCGAAGTTGGATGCCCATCTTGAGA
Seq A exon
CCTTTCCAGAGTCTCAGAACCTGTACATCCGTCTCCGCCTCATGCAGCTGAACCGCGCCGTGTGTCTGGAGTGTCCAGAGTTTCATGTGCCATGGTTTCATGAGCGTTACTGTCAACAGCTGCAGAAGAGAG
Seq C2 exon
CCAACAGCTCCATCAGCCCAATCCAGCAGCAGATCCATAAGATTCTTGGTGAAGTCCTGGGAGGAATCAACTGTGCCAAAGCAGCAGTGGTGACTCCGTATTACTATACTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056128-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PD(52.9=84.1)
A:
PF083687=FAST_2=PU(40.9=80.0)
C2:
PF083687=FAST_2=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTTGACCCTCACCTGCT
R:
CGACAGTATAGTAATACGGAGTCACC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]