GgaEX6042406 @ galGal4
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr7:18152747-18154856:+
Coord C1 exon
chr7:18152747-18152875
Coord A exon
chr7:18153605-18153736
Coord C2 exon
chr7:18154743-18154856
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTCATTTTGTTCAATTTAGTCC
3' ss Score
6.62
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGTTTTGAAACTCATCACTTGGTGCTGCTGGGTTATATTTTGGCAGTGGCTGGCTATTTTCCTCCAGCTCTCATAAGGACAATATTTGATGTTTCTTTCTTAAGCAGATTGGATGCTCAGCTTGAAG
Seq A exon
TCCTGTCTGATACCTTAAGGCAGAGGGTCCGCTCACGGCTTATGAAACTGAACAGAGCAGTCTGTCTGGAATGTCCGGAGTTTCACATCCCTTGGTTTCATGAGCAGTATTTCCAGCGTGTCTTGTGTAAAG
Seq C2 exon
GCATTCGCCGAATAAATCCGCTGCGACAGCATGTTCACAGGATGCTGGCAGAGATCTTAGGAGGGAGCCATTATGCAAGAGTGTCTGTTCTCACACCGTACTACTATGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'13-15,'13-11,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PD(52.1=84.1)
A:
PF083687=FAST_2=PU(40.9=80.0)
C2:
PF083687=FAST_2=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTTGAAACTCATCACTTGGTGC
R:
CTATTTCATAGTAGTACGGTGTGAGA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]