MmuEX6101965 @ mm10
Exon Skipping
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69686815-69700238:-
Coord C1 exon
chr2:69700124-69700238
Coord A exon
chr2:69694516-69694647
Coord C2 exon
chr2:69686815-69687140
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAATGTGTTCTTAATTTCAGTTT
3' ss Score
8.09
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
ATCCATCCCTTTTCAGTCCTTGCTATTATTCTCCCATTCAGCATTCTGAACTATGATCCACCTCAAAAGGATGAATTCTTTGGAGCGTGTGTCCAATGCTGTAATTCTTACTTAG
Seq A exon
TTTTACCTTCAAGTCTGAGTGCAAGGATCCAGTTCCGCCTCATGGAGTTAAATAGAGCAGTCTGCTTGGAGTGCCCCGAGCTGCAGGTTCCATGGTTTCATGACCGCTTTTGTCAGCGACAGTTTAACAAAG
Seq C2 exon
ATCCCTTACTTTGAGTGGAACTCTATGGCAATGTCAACGAAGGATGCACGGATGGACTACCTGAGAGAACATCTATTTGGGGAAGGCAAATCATGACTGTAGTTTTCATTTAAAATGACTGTGGTGGACTGGAGAGGTGGCACAGAGGAAAAGAACACTGGCTGCTCTTGCAGAGATCCTAAGTTCAATCCCCAGCACCCACATGGCGGCTCATAACCATCTATAATGTGATCTGGGACCCTCTTCTGGCCTGCAGGCATACATGCAGGCAGAACACTGTATACATAATAAATAAATAAATAAATAAATCTTTTTAAAAAATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PU(46.5=84.6)
A:
PF083687=FAST_2=PU(40.9=80.0)
C2:
PF083735=RAP=PD(38.3=71.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTGTGTCCAATGCTGTA
R:
ATGGTTATGAGCCGCCATGTG
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types